If you want to load a different ini file, you can add commandline options to specify a different ini file. I have a shortcut to open a titanium ini, which i have renamed titanium.ini. To load that i run server.exe -f titanium.ini. The -f option loads the next parameter as the filename for the ini.
I have several shortcuts i use for testing. I do most of my work using an emu server with a titanium client.
Razzle